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Creators/Authors contains: "Tanaka"

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  1. Extracellular ATP (eATP) signaling inArabidopsis thalianais mediated by the purinoceptor P2K1. Previous studies have clarified that the downstream transcriptional responses to eATP involve jasmonate (JA)-based signaling components such as the JA receptor (COI1) and JA-responsive bHLH transcription factors (MYCs). However, the specific contributions of JA signaling itself on eATP signaling are unexplored. Here, we report that JA primes plant responses to eATP through P2K1. Our findings show that JA treatment significantly upregulatesP2K1transcription, corroborating our observation that JA facilitates eATP-induced cytosolic calcium elevation and transcriptional reprogramming in a JA signaling-dependent manner. Additionally, we find that salicylic acid pretreatment represses eATP-induced plant response. These results suggest that JA accumulation during biotic or abiotic stresses may potentiate eATP signaling, enabling plants to better cope with subsequent stress events. Plant hormone jasmonate (JA) enhances plant responses to extracellular ATP (eATP) inArabidopsis thalianathrough a mechanism dependent on the JA receptor COI1 and the eATP receptor P2K1. The reciprocal amplification of these signals provides a mechanistic explanation for how plants effectively respond to different stress events. 
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    Free, publicly-accessible full text available September 24, 2026
  2. Free, publicly-accessible full text available July 1, 2026
  3. Abstract This paper introduces a new computational framework for modeling and designing morphable surface structures based on an integrated approach that leverages circle packing for surface representation, conformal mapping to link local and global kinematics, and topology optimization for actuator design. The framework utilizes a unique strategy for employing optimized compliant actuators as the basic building blocks of the morphable surface. These actuators, designed as circular elements capable of modifying their radius and curvature, are optimized using level set topology optimization, considering both kinematic performance and structural stiffness. Circle packing is employed to represent the surface geometry, while conformal mapping guides the kinematic analysis, ensuring alignment between local actuator motions and desired global surface transformations. The design process involves mapping optimized component designs back onto the circle packing representation, facilitating coordinated control, and achieving harmony between local and global geometries. This leads to efficient actuation and enables precise control over the surface morphology. The effectiveness of the proposed framework is demonstrated through two numerical examples, showcasing its capability to design complex, morphable surfaces with potential applications in fields requiring dynamic shape adaptation. 
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    Free, publicly-accessible full text available September 1, 2026
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  6. Accepted and published in the Proceedings of the 2025 USENIX Annual Technical Conference (USENIX ATC ’25). Deep neural network (DNN) training continues to scale rapidly in terms of model size, data volume, and sequence length, to the point where multiple machines are required to fit large models for training. Different distributed and parallel training strategies have been developed to support large-scale DNN training by partitioning the training state across GPUs. However, existing DNN training systems provide very limited support for reconfiguring parallelism strategies in the middle of the training via checkpointing. This limitation arises because distributed checkpoints are tightly coupled to specific model parallelism and hardware configurations, preventing large-scale training jobs from efficiently adapting to hardware failures or resource elasticity. This paper presents Universal Checkpointing (UCP), a novel checkpointing system that enables flexible and efficient DNN training with reconfigurable parallelism. UCP overcomes challenges in existing systems by decoupling checkpoint structure from parallel training strategies and hardware configurations. In addition, we present a pattern-based reconfiguration pipeline that enables automatic, flexible, and efficient mapping of checkpoint state to various parallelism strategies. Evaluation on a range of DNN models, including state-of-the-art dense and sparse LLMs, shows that UCP enables reconfiguration for a broader set of widely used parallelism strategies than existing solutions while adding negligible reconfiguration cost. UCP has been successfully employed in real LLM training workloads, greatly enhancing their flexibility and resilience to dynamic hardware environments. 
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    Free, publicly-accessible full text available July 7, 2026
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